Synopsis
Description
gpop3tst makes modifications to a GPOP-format file,
basename.gpo, according to the modification
information file, basename.mod, before the
thermodynamic and/or rate constant calculations.Input
| 1) | A GPOP-format file, basename.gpo. |
| 2) | A modification information file, basename.mod. |
gpop1scf creates a template modification
file, basename.mod
(or basename_.mod). For example, if the sample
Gaussian output, ethyl500.log, is processes, the newly
created modification template file, ethyl500.mod
(or ethyl500_.mod), looks like;! gElec 2 ! rotSymNbr 1 ! numIsomers 1 ! isTS false ! energyTST # ! setIntRotor idVib nSym moi1 moi2 V0 comment
!' to the
end of the line are comments. The template file include typical
keys and value as comments.
gElec (degeneracy of the
elctronic state), rotSymNbr (rotational symmetry number),
numIsomers (number of isomers), and isTS
(flag indicates transition state) are the default that are already set
in the GPOP-format file. Thus, if these values are correct, leave them
commented out, but if any value is wrong, remove 'gElec
or eStates shown below, which are directly used for calculations.
gElec 4or specify the fine structures by
eStates (see below).
gElec key is completely ignored.
nEstates is the number of electronic states,
followed by nEstates pairs of
(g energy) where g and
energy are the degeneracy and the energy (in
cm–1 unit) of each state. Below is an example for
the OH radical with 2Π3/2 and
2Π1/2 spin-orbit states.
eStates 2 2 -69.6 2 69.6
rotSymNbr
and numIsomers shown below, which are directly used for calculations.
rotSymNbr 2
numIsomers 1
numIsomers key is ignored. nIsomSts
is the number of isomeric species, followed by nIsomSts
pairs of (n energy) where n and
energy are the number of occurrence and the energy
(in cm–1 unit) of each isomeric species.
For example for butane (C4H10) with lowest
C2h (anti) conformer and two
enantiomers of C2
(gauche) form, one may need to specify;
isomStates 2 1 0 2 247
flag must be either of 'true'
or 'false'.
factor.
factor,
for the scaling of vibrational frequencies in the zero-point energy
calculation. This affects the results when used with
useSCFenergy+ZPE and/or setIntRotor.
idVib
is the index of the vibrational mode which is treated as a hindered
internal rotor. If this index is set to 0 or negative value,
gpop3tst automatically detects the most similar
vibrational mode (note-5).
nSym is the symmetry number of the internal rotation.
moi1 and moi2 inputs specifies
the intramolecular rotation and the format for these are the same as
that in gpop6irt program.
V0 is the height of the hindrance potential.
if a positive V0 input is found, the value is used
for calculation. If V0 is zero, it is treated as
a free rotor. If V0 is negative, V0 is calculated
from the eq. (2) below.
comment is an optional comment field.
The vibrational frequency is scaled by scaleFactZPE
for the quantum mechanical correction and for the estimation of V0,
in order to keep the consistency of zero-point energy.
gElec)
rotSymNbr)
numIsomers)
isomStates
key is recommended instead of numIsomers.
isTS)
true' if at least one imaginary
vibrational frequency was found. This may not be correct for very loose
transition states for variational calculations.
setIntRotor)
gpop6mrt for further discussion
on this problem.
Output
basename.gpo, is rewritten.
With "-ath" option in the command line, a
template file for the auxiliary thermodynamic input,
basename.ath, is also created. (See the manual for gpop4thf
for details.)
setIntRotor
is treated as a sinusoidally hindered rotor with a potential energy
curve,
nSym in
setIntRotor), and θ is angle of rotation.
Its partition
function and thermodynamic functions are calculated by using
Pitzer-Gwin
approximation [1] in the programs
tstrate and gpop4thf.
The potential barrier height, V0,
is estimated from
the harmonic frequency of corresponding vibrational mode, ν,
as,

References
| [1] | K. S. Pitzer and W. D. Gwinn, J. Chem. Phys. 10, 428 (1942). |