Followings are the examples of calculation of thermodynamic functions and equilibrium constants.
Pre-processing
gpop1scf for
ethyl500.log and etln500.log as
Processing GPOP format files
*.gpo, can be directly used
by diagnostics and analysis tools named as gpop5* or
gpop6*. However, FURTHER INFORMATION,
such as the energy and information of the hindered rotor,
is required for the thermodynamics and rate constants calculations
(gpop4thf, tstrate, vtst,
and prepum).
Additional informations must be provided in the modification
information files, *.mod, and the GPOP-format files
SHOULD be re-processed (modified) by gpop3tst program before they
are used for gpop4thf, tstrate, etc.
ethyl500.mod and etln500.mod,
provided in the sample directory, and compare them with the
template modification files generated by gpop1scf,
ethyl500_.mod and etln500_.mod.gpop1scf creates a template
*.mod file as ethyl500.mod for
ethyl500.gpo, but, when *.mod file with
the same name already exists, a template is generated with different name,
for example, ethyl500_.mod.
ethyl500.mod adds a internal rotator, and
the file is different from the automatically generated template,
ethyl500_.mod, while etln500.mod
is used as generated.
ethyl500.gpo and
etln500.gpo as
.mod file. At least, the energy
(energyTST) must be provided here, unless you happen to use
CBS-QB3 method for energy evaluation. For other methods,
gpop1scf generates useSCFenergy+ZPE key in
*.mod files, however, this is usually not satisfactory.
.mod, manually.
The pre-processor cannot read out the Gaussian output for atomic species
since it does not contain useful infomation such as the structure of the
molecule or the vibrational frequency.
ethyl500.gpo,
etln500.gpo, and hatom500.gpo,
are now ready for thermodynamic calculations.
Calculating thermodynamic functions for a single species
ethyl500.csv, which contains the
thermodynamic calculation results, should be created if the calculations
were done successfully.
This will also create ethyl500.lst
which can be used as an input to THERMFIT program (developed by Prof.
Bozzelli; available in THERM program suit) which generates 7-coefficient
NASA polynomial format file for thermodynamic data, which is commonly
used by the softwares such as Chemkin.
Calculating equilibrium constants for a reaction
ethylCHdissoc.rxn,
must be in the current directory.
tstrate program as;
ethylCHdissoc.csv.